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{"UniProt":{"server":"http://data.togotable.dbcls.jp/sparql","attributes":{"entry_name":{"label":"Entry name","sparql":"PREFIX up:<http://purl.uniprot.org/core/> select ?merge where { optional { [subject] up:mnemonic ?merge. } }"},"gene_name":{"label":"Gene name","sparql":"SELECT (?gene_names AS ?merge)\r\nWHERE { OPTIONAL {\r\n?gene_names_node <http://www.w3.org/2004/02/skos/core#prefLabel> ?gene_names .\r\n[subject] <http://purl.uniprot.org/core/encodedBy> ?gene_names_node .\r\n}}"},"recommended_name_full":{"label":"Recommended name (Full name)","sparql":"select ?merge where { optional { [subject] <http://purl.uniprot.org/core/recommendedName> ?recommended_name_full_0. ?recommended_name_full_0 <http://purl.uniprot.org/core/fullName> ?merge.} } "},"recommended_name_short":{"label":"Recommended name (Short name)","sparql":"select ?merge where { optional { [subject] <http://purl.uniprot.org/core/recommendedName> ?recommended_name_short_0. ?recommended_name_short_0 <http://purl.uniprot.org/core/shortName> ?merge.} } "},"recommended_name_ec":{"label":"Recommended name (EC)","sparql":"select ?merge where { optional { [subject] <http://purl.uniprot.org/core/recommendedName> ?recommended_name_ec_0. ?recommended_name_ec_0 <http://purl.uniprot.org/core/ecName> ?merge. } }"},"organism":{"label":"Organism","sparql":"SELECT (?organism AS ?merge)\r\nWHERE { OPTIONAL {\r\n?taxonomy_id <http://purl.uniprot.org/core/scientificName> ?organism .\r\n[subject] <http://purl.uniprot.org/core/organism> ?taxonomy_id .\r\n}}"},"cc_function":{"label":"General annotation (Function)","sparql":"SELECT (?function_annotation_comment AS ?merge)\r\nWHERE { OPTIONAL {\r\n?annotation <http://www.w3.org/2000/01/rdf-schema#comment> ?function_annotation_comment .\r\n?annotation <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.uniprot.org/core/Function_Annotation> .\r\n[subject] <http://purl.uniprot.org/core/annotation> ?annotation .\r\n}}"},"cc_catalytic_activity":{"label":"General annotation (Catalytic activity)","sparql":"SELECT (?catalytic_activity_annotation_comment AS ?merge)\r\nWHERE { OPTIONAL {\r\n?annotation <http://www.w3.org/2000/01/rdf-schema#comment> ?catalytic_activity_annotation_comment .\r\n?annotation <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.uniprot.org/core/Catalytic_Activity_Annotation> .\r\n[subject] <http://purl.uniprot.org/core/annotation> ?annotation .\r\n}}"},"cc_subunit_structure":{"label":"General annotation (Subunit structure)","sparql":"SELECT (?subunit_annotation_comment AS ?merge)\r\nWHERE { OPTIONAL {\r\n?annotation <http://www.w3.org/2000/01/rdf-schema#comment> ?subunit_annotation_comment .\r\n?annotation <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.uniprot.org/core/Subunit_Annotation> .\r\n[subject] <http://purl.uniprot.org/core/annotation> ?annotation .\r\n}}"},"cc_pathway":{"label":"General annotation (Pathway)","sparql":"SELECT (?pathway_annotation_comment AS ?merge)\r\nWHERE { OPTIONAL {\r\n?annotation <http://www.w3.org/2000/01/rdf-schema#comment> ?pathway_annotation_comment .\r\n?annotation <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.uniprot.org/core/Pathway_Annotation> .\r\n[subject] <http://purl.uniprot.org/core/annotation> ?annotation .\r\n}}"},"cc_tissue_specificity":{"label":"General annotation (Tissue specificity)","sparql":"SELECT (?tissue_specificity_annotation_comment AS ?merge)\r\nWHERE { OPTIONAL {\r\n?annotation <http://www.w3.org/2000/01/rdf-schema#comment> ?tissue_specificity_annotation_comment .\r\n?annotation <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.uniprot.org/core/Tissue_Specificity_Annotation> .\r\n[subject] <http://purl.uniprot.org/core/annotation> ?annotation .\r\n}}"},"cc_domain":{"label":"General annotation (Domain)","sparql":"SELECT (?domain_annotation_comment AS ?merge)\r\nWHERE { OPTIONAL {\r\n?annotation <http://www.w3.org/2000/01/rdf-schema#comment> ?domain_annotation_comment .\r\n?annotation <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.uniprot.org/core/Domain_Annotation> .\r\n[subject] <http://purl.uniprot.org/core/annotation> ?annotation .\r\n}}"},"cc_posttranslational_midification":{"label":"General annotation (PTM)","sparql":"SELECT (?ptm_annotation_comment AS ?merge)\r\nWHERE { OPTIONAL {\r\n?annotation <http://www.w3.org/2000/01/rdf-schema#comment> ?ptm_annotation_comment .\r\n?annotation <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.uniprot.org/core/PTM_Annotation> .\r\n[subject] <http://purl.uniprot.org/core/annotation> ?annotation .\r\n}}"},"go_ids":{"label":"GO IDs","sparql":"SELECT (?go AS ?merge)\r\nWHERE { OPTIONAL {\r\n[subject] <http://purl.uniprot.org/core/classifiedWith> ?go .\r\nFILTER regex (str(?go), '/go/') .\r\n}}"},"go_terms":{"label":"GO terms","sparql":"SELECT (?label AS ?merge)\r\nWHERE { OPTIONAL {\r\n?go <http://www.w3.org/2000/01/rdf-schema#label> ?label .\r\n[subject] <http://purl.uniprot.org/core/classifiedWith> ?go .\r\nFILTER regex (str(?go), '/go/') .\r\n}}"},"ft_motif":{"label":"Sequence annotation (motif)","sparql":"SELECT (?comment AS ?merge)\r\nWHERE { OPTIONAL {\r\n?range <http://purl.uniprot.org/core/end> ?end .\r\n?range <http://purl.uniprot.org/core/begin> ?begin .\r\n?annotation <http://purl.uniprot.org/core/range> ?range .\r\n?annotation <http://www.w3.org/2000/01/rdf-schema#comment> ?comment .\r\n?annotation <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.uniprot.org/core/Motif_Annotation> .\r\n[subject] <http://purl.uniprot.org/core/annotation> ?annotation .\r\n}}"},"ft_region":{"label":"Sequence annotation (region)","sparql":"SELECT ?id ?begin ?end (?comment AS ?merge)\r\nWHERE { OPTIONAL {\r\n?range <http://purl.uniprot.org/core/end> ?end .\r\n?range <http://purl.uniprot.org/core/begin> ?begin .\r\n?annotation <http://purl.uniprot.org/core/range> ?range .\r\n?annotation <http://www.w3.org/2000/01/rdf-schema#comment> ?comment .\r\n?annotation <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.uniprot.org/core/Region_Annotation> .\r\n[subject] <http://purl.uniprot.org/core/annotation> ?annotation .\r\n}}"},"ft_glycosylation":{"label":"Sequence annotation (glycosylation)","sparql":"SELECT ?id ?begin ?end (?comment AS ?merge)\r\nWHERE { OPTIONAL {\r\n?range <http://purl.uniprot.org/core/end> ?end .\r\n?range <http://purl.uniprot.org/core/begin> ?begin .\r\n?annotation <http://purl.uniprot.org/core/range> ?range .\r\n?annotation <http://www.w3.org/2000/01/rdf-schema#comment> ?comment .\r\n?annotation <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.uniprot.org/core/Glycosylation_Annotation> .\r\n[subject] <http://purl.uniprot.org/core/annotation> ?annotation .\r\n}}"},"ft_lipidation":{"label":"Sequence annotation (lipidation)","sparql":"SELECT ?id ?begin ?end (?comment AS ?merge)\r\nWHERE { OPTIONAL {\r\n?range <http://purl.uniprot.org/core/end> ?end .\r\n?range <http://purl.uniprot.org/core/begin> ?begin .\r\n?annotation <http://purl.uniprot.org/core/range> ?range .\r\n?annotation <http://www.w3.org/2000/01/rdf-schema#comment> ?comment .\r\n?annotation <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.uniprot.org/core/Lipidation_Annotation> .\r\n[subject] <http://purl.uniprot.org/core/annotation> ?annotation .\r\n}}"},"sequence":{"label":"Sequence","sparql":"SELECT (?sequence as ?merge)\r\nWHERE { OPTIONAL {\r\n?seq <http://www.w3.org/1999/02/22-rdf-syntax-ns#value> ?sequence .\r\n[subject] <http://purl.uniprot.org/core/sequence> ?seq .\r\n}}"},"mass":{"label":"Mass (Da)","sparql":"SELECT (?mass as ?merge)\r\nWHERE { OPTIONAL {\r\n?seq <http://purl.uniprot.org/core/mass> ?mass .\r\n[subject] <http://purl.uniprot.org/core/sequence> ?seq . \r\n}}"},"pubmed_id":{"label":"Pubmed ID","sparql":"select (?pubmed_id as ?merge) where { optional { [subject] <http://purl.uniprot.org/core/citation> ?citation. ?citation <http://www.w3.org/2004/02/skos/core#exactMatch> ?pubmed_id . FILTER regex (str(?pubmed_id), 'pubmed'). }}"},"xref_embl":{"label":"EMBL/GenBank/DDBJ","sparql":"select (?xref_embl as ?merge) where { optional { [subject] <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?xref_embl. FILTER regex (str(?xref_embl), '/embl-cds/'). }}"},"xref_ipi":{"label":"IPI","sparql":"select (?ipi as ?merge) where { optional { [subject] <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?ipi. FILTER regex (str(?ipi), '/ipi/'). }}"},"xref_pir":{"label":"PIR","sparql":"select (?pir as ?merge) where { optional { [subject] <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?pir. FILTER regex (str(?pir), '/pir/'). }}"},"xref_refseq":{"label":"RefSeq","sparql":"select (?refseq as ?merge) where { optional { [subject] <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?refseq. FILTER regex (str(?refseq), '/refseq/'). } }"},"xref_unigene":{"label":"UniGene","sparql":"select (?unigene as ?merge) where { optional { [subject] <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?unigene. FILTER regex (str(?unigene), '/unigene/'). }}"},"xref_pdb":{"label":"PDB","sparql":"select (?pdb as ?merge) where { optional { [subject] <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?pdb. FILTER regex (str(?pdb), '/pdb/'). }}"},"xref_ensembl":{"label":"Ensembl","sparql":"select (?ensembl as ?merge) where { optional { [subject] <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?ensembl. FILTER regex (str(?ensemble), '/ensemble/'). }}"},"xref_geneid":{"label":"GeneID","sparql":"select (?geneid as ?merge) where { optional { [subject] <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?geneid. FILTER regex (str(?geneid), '/geneid/'). }}"},"xref_kegg":{"label":"KEGG","sparql":"select (?kegg as ?merge) where { optional { [subject] <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?kegg. FILTER regex (str(?kegg), '/kegg/'). }}"},"xref_ucsc":{"label":"UCSC","sparql":"select (?ucsc as ?merge) where { optional { [subject] <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?ucsc. FILTER regex (str(?ucsc), '/ucsc/'). }}"}}},"PDB":{"server":"http://data.togotable.dbcls.jp/sparql","attributes":{"related_pdb_id":{"label":"Related PDB ID","sparql":"select ?merge from <http://pdbj.dbcls.jp/> where { ?pdbx_database_related <http://rdf.wwpdb.org/schema/pdbx-v40.owl#pdbx_database_related.db_name> 'PDB'. ?pdbx_database_related <http://rdf.wwpdb.org/schema/pdbx-v40.owl#pdbx_database_related.db_id> ?merge. ?pdbx_database_relatedCategory <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_pdbx_database_related> ?pdbx_database_related. [subject] <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_pdbx_database_relatedCategory> ?pdbx_database_relatedCategory }"},"descriptor":{"label":"Descriptor","sparql":"select ?merge from <http://pdbj.dbcls.jp/> where {?struct <http://rdf.wwpdb.org/schema/pdbx-v40.owl#struct.pdbx_descriptor> ?merge. ?structCategory <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_struct> ?struct. [subject] <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_structCategory> ?structCategory }"},"title":{"label":"Title","sparql":"select ?merge from <http://pdbj.dbcls.jp/> where { ?struct <http://rdf.wwpdb.org/schema/pdbx-v40.owl#struct.title> ?merge. ?structCategory <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_struct> ?struct. [subject] <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_structCategory> ?structCategory }"},"functional_Keywords":{"label":"Functional Keywords","sparql":"select ?merge from <http://pdbj.dbcls.jp/> where {?struct_keywords <http://rdf.wwpdb.org/schema/pdbx-v40.owl#struct_keywords.text> ?merge. ?struct_keywordsCategory <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_struct_keywords> ?struct_keywords. [subject] <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_struct_keywordsCategory> ?struct_keywordsCategory }"},"biological_source":{"label":"Biological source","sparql":"select (concat(?scientific_name, '(', ?common_name, ')' ) as ?merge) from <http://pdbj.dbcls.jp/> where {?entity_src_gen <http://rdf.wwpdb.org/schema/pdbx-v40.owl#entity_src_gen.gene_src_common_name> ?common_name. ?entity_src_gen <http://rdf.wwpdb.org/schema/pdbx-v40.owl#entity_src_gen.pdbx_gene_src_scientific_name> ?scientific_name. ?entity_src_genCategory <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_entity_src_gen> ?entity_src_gen. [subject] <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_entity_src_genCategory> ?entity_src_genCategory }"},"cellular_location":{"label":"Cellular location","sparql":"select ?merge from <http://pdbj.dbcls.jp/> where { ?entity_src_gen <http://rdf.wwpdb.org/schema/pdbx-v40.owl#entity_src_gen.pdbx_gene_src_cellular_location> ?merge. ?entity_src_genCategory <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_entity_src_gen> ?entity_src_gen. [subject] <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_entity_src_genCategory> ?entity_src_genCategory }"},"organ_source":{"label":"Organ source","sparql":"select ?merge from <http://pdbj.dbcls.jp/> where { ?entity_src_gen <http://rdf.wwpdb.org/schema/pdbx-v40.owl#entity_src_gen.pdbx_gene_src_organ> ?merge. ?entity_src_genCategory <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_entity_src_gen> ?entity_src_gen. [subject] <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_entity_src_genCategory> ?entity_src_genCategory }"},"total_number_of_polymer_chains":{"label":"Total number of polymer chains","sparql":"select (sum(xsd:integer(?number_of_molecules)) as ?merge) from <http://pdbj.dbcls.jp/> where {?entity <http://rdf.wwpdb.org/schema/pdbx-v40.owl#entity.type> 'polymer'. ?entity <http://rdf.wwpdb.org/schema/pdbx-v40.owl#entity.pdbx_number_of_molecules> ?number_of_molecules. ?entityCategory <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_entity> ?entity. [subject] <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_entityCategory> ?entityCategory.}"},"total_molecular_weight":{"label":"Total molecular weight","sparql":"select (sum(xsd:float(?number_of_molecules) * xsd:float(?formula_weight)) as ?merge) from <http://pdbj.dbcls.jp/> where { {?entity <http://rdf.wwpdb.org/schema/pdbx-v40.owl#entity.type> 'polymer'} UNION {?entity <http://rdf.wwpdb.org/schema/pdbx-v40.owl#entity.type> 'non-polymer'}. ?entity <http://rdf.wwpdb.org/schema/pdbx-v40.owl#entity.formula_weight> ?formula_weight. ?entity <http://rdf.wwpdb.org/schema/pdbx-v40.owl#entity.pdbx_number_of_molecules> ?number_of_molecules. ?entityCategory <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_entity> ?entity. [subject] <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_entityCategory> ?entityCategory }"},"xref_rcsb_pdb":{"label":"RCSB-PDB","sparql":"select (?o as ?merge) from <http://pdbj.dbcls.jp/> where {[subject] <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?o FILTER regex(?o, 'rcsb') }"},"xref_pdbe":{"label":"PDBe","sparql":"select (?o as ?merge) from <http://pdbj.dbcls.jp/> where {[subject] <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?o FILTER regex(?o, 'pdbe')}"},"xref_pdbj":{"label":"PDBj","sparql":"select (?o as ?merge) from <http://pdbj.dbcls.jp/> where {[subject] <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?o FILTER regex(?o, 'pdbj')}"},"xref_uniprot":{"label":"UNIPROT","sparql":"select (?o as ?merge) from <http://pdbj.dbcls.jp/> where { ?struct_ref <http://rdf.wwpdb.org/schema/pdbx-v40.owl#link_to_uniprot> ?o. ?struct_refCategory <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_struct_ref> ?struct_ref. [subject] <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_struct_refCategory> ?struct_refCategory }"},"xref_enzyme":{"label":"Enzyme","sparql":"select (?o as ?merge) from <http://pdbj.dbcls.jp/> where {?entity <http://rdf.wwpdb.org/schema/pdbx-v40.owl#link_to_enzyme> ?o. ?entityCategory <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_entity> ?entity. [subject] <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_entityCategory> ?entityCategory}"},"xref_taxonomy":{"label":"Taxonomy","sparql":"select (concat(substr(str(?tax1), 33), ',', substr(str(?tax2), 33)) as ?merge) from <http://pdbj.dbcls.jp/> where { [subject] <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_entity_src_genCategory> ?src_genCategory. ?src_genCategory <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_entity_src_gen> ?src_gen. OPTIONAL {?src_gen <http://rdf.wwpdb.org/schema/pdbx-v40.owl#link_to_taxonomy_source> ?tax1 } OPTIONAL {?src_gen <http://rdf.wwpdb.org/schema/pdbx-v40.owl#link_to_taxonomy_host> ?tax2}}"},"xref_pubmed":{"label":"PubMed","sparql":"select (?o as ?merge) from <http://pdbj.dbcls.jp/> where {[subject] <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_citationCategory> ?citationCategory. ?citationCategory <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_citation> ?citation. ?citation <http://rdf.wwpdb.org/schema/pdbx-v40.owl#link_to_pubmed> ?o. FILTER (xsd:integer(substr(str(?o), 36)) > 0) }"},"xref_doi":{"label":"DOI","sparql":"select (?o as ?merge) from <http://pdbj.dbcls.jp/> where {[subject] <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_citationCategory> ?citationCategory. ?citationCategory <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_citation> ?citation. ?citation <http://rdf.wwpdb.org/schema/pdbx-v40.owl#link_to_doi> ?o }"}}},"GlycomeDB":{"server":"http://data.togotable.dbcls.jp/sparql","attributes":{"glycoct":{"label":"GlycoCT representation","sparql":"select ?merge from <http://glycomedb.dbcls.jp/>\r\nwhere { OPTIONAL {\r\n[subject] <http://purl.jp/bio/12/glyco/glycan#has_glycosequence> ?seq .\r\n?seq <http://purl.jp/bio/12/glyco/glycan#in_carbohydrate_format> <http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_glycoct> .\r\n?seq <http://purl.jp/bio/12/glyco/glycan#has_sequence> ?merge\r\n}}"},"carbbank":{"label":"CarbBank representation","sparql":"select ?merge from <http://glycomedb.dbcls.jp/>\r\nwhere { OPTIONAL {\r\n[subject] <http://purl.jp/bio/12/glyco/glycan#has_glycosequence> ?seq .\r\n?seq <http://purl.jp/bio/12/glyco/glycan#in_carbohydrate_format> <http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_carbbank> .\r\n?seq <http://purl.jp/bio/12/glyco/glycan#has_sequence> ?merge .\r\n}}"},"kcf":{"label":"KCF representation","sparql":"select ?merge from <http://glycomedb.dbcls.jp/>\r\nwhere { OPTIONAL {\r\n[subject] <http://purl.jp/bio/12/glyco/glycan#has_glycosequence> ?seq .\r\n?seq <http://purl.jp/bio/12/glyco/glycan#in_carbohydrate_format> <http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_linucs> .\r\n?seq <http://purl.jp/bio/12/glyco/glycan#has_sequence> ?merge .\r\nFILTER regex (str(?seq), '/kcf').\r\n}}"},"linucs":{"label":"Linucs representation","sparql":"select ?merge from <http://glycomedb.dbcls.jp/>\r\nwhere { OPTIONAL {\r\n[subject] <http://purl.jp/bio/12/glyco/glycan#has_glycosequence> ?seq .\r\n?seq <http://purl.jp/bio/12/glyco/glycan#in_carbohydrate_format> <http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_linucs> .\r\n?seq <http://purl.jp/bio/12/glyco/glycan#has_sequence> ?merge .\r\nFILTER regex (str(?seq), '/linucs').\r\n}}"},"glyde2":{"label":"GlydeII representaion","sparql":"select ?merge from <http://glycomedb.dbcls.jp/>\r\nwhere { OPTIONAL {\r\n[subject] <http://purl.jp/bio/12/glyco/glycan#has_glycosequence> ?seq .\r\n?seq <http://purl.jp/bio/12/glyco/glycan#in_carbohydrate_format> <http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_glyde2> .\r\n?seq <http://purl.jp/bio/12/glyco/glycan#has_sequence> ?merge .\r\n}}"},"jcggdb":{"label":"JCGGDB ID","sparql":"select ?merge from <http://glycomedb.dbcls.jp/>\r\nwhere { OPTIONAL {\r\n[subject] <http://purl.jp/bio/12/glyco/glycan#has_resource_entry> ?db .\r\n?db <http://purl.jp/bio/12/glyco/glycan#in_glycan_database> <http://purl.jp/bio/12/glyco/glycan#database_jcggdb> .\r\n?db <http://purl.org/dc/terms/identifier> ?merge .\r\n}}"},"kegg":{"label":"KEGG GLYCAN ID","sparql":"select ?merge from <http://glycomedb.dbcls.jp/>\r\nwhere { OPTIONAL {\r\n[subject] <http://purl.jp/bio/12/glyco/glycan#has_resource_entry> ?db .\r\n?db <http://purl.jp/bio/12/glyco/glycan#in_glycan_database> <http://purl.jp/bio/12/glyco/glycan#database_kegg> .\r\n?db <http://purl.org/dc/terms/identifier> ?merge .\r\n}}"},"pdb":{"label":"PDB ID","sparql":"select ?merge from <http://glycomedb.dbcls.jp/>\r\nwhere { OPTIONAL {\r\n[subject] <http://purl.jp/bio/12/glyco/glycan#has_resource_entry> ?db .\r\n?db <http://purl.jp/bio/12/glyco/glycan#in_glycan_database> <http://purl.jp/bio/12/glyco/glycan#database_pdb> .\r\n?db <http://purl.org/dc/terms/identifier> ?merge .\r\n}}"},"bcsdb":{"label":"DCSDB ID","sparql":"select ?merge from <http://glycomedb.dbcls.jp/>\r\nwhere { OPTIONAL {\r\n[subject] <http://purl.jp/bio/12/glyco/glycan#has_resource_entry> ?db .\r\n?db <http://purl.jp/bio/12/glyco/glycan#in_glycan_database> <http://purl.jp/bio/12/glyco/glycan#database_bcsdb> .\r\n?db <http://purl.org/dc/terms/identifier> ?merge .\r\n}}"},"carbbank_id":{"label":"CarbBank ID","sparql":"select ?merge from <http://glycomedb.dbcls.jp/>\r\nwhere { OPTIONAL {\r\n[subject] <http://purl.jp/bio/12/glyco/glycan#has_resource_entry> ?db .\r\n?db <http://purl.jp/bio/12/glyco/glycan#in_glycan_database> <http://purl.jp/bio/12/glyco/glycan#database_carbbank> .\r\n?db <http://purl.org/dc/terms/identifier> ?merge .\r\n}}"},"cfg":{"label":"CFG ID","sparql":"select ?merge from <http://glycomedb.dbcls.jp/>\r\nwhere { OPTIONAL {\r\n[subject] <http://purl.jp/bio/12/glyco/glycan#has_resource_entry> ?db .\r\n?db <http://purl.jp/bio/12/glyco/glycan#in_glycan_database> <http://purl.jp/bio/12/glyco/glycan#database_cfg> .\r\n?db <http://purl.org/dc/terms/identifier> ?merge .\r\n}}"},"de":{"label":"Glycoscience.de ID","sparql":"select ?merge from <http://glycomedb.dbcls.jp/>\r\nwhere { OPTIONAL {\r\n[subject] <http://purl.jp/bio/12/glyco/glycan#has_resource_entry> ?db .\r\n?db <http://purl.jp/bio/12/glyco/glycan#in_glycan_database> <http://purl.jp/bio/12/glyco/glycan#database_glycosciences_de> .\r\n?db <http://purl.org/dc/terms/identifier> ?merge .\r\n}}"}}}}
{"UniProt":{"subject":"UniProt","key_regex":"^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$","dbs":{"UniProt":{"limit":null,"prefix":"http://purl.uniprot.org/uniprot/","sparql":""},"PDB":{"limit":"10","prefix":"http://purl.uniprot.org/uniprot/","sparql":"select (?pdb as ?merge) ?pdb from <http://pdbj.dbcls.jp/> where {?struct_ref <http://rdf.wwpdb.org/schema/pdbx-v40.owl#link_to_uniprot> [key]. ?struct_refCategory <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_struct_ref> ?struct_ref. ?pdb <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_struct_refCategory> ?struct_refCategory}"}}},"PDB":{"key_regex":"[0-9][A-Z0-9]{3}","subject":"PDB","dbs":{"UniProt":{"limit":"10","prefix":"http://rdf.wwpdb.org/pdb/","sparql":"select (?uniprot as ?merge) where { optional { ?uniprot <http://www.w3.org/2000/01/rdf-schema#seeAlso> [key]. } }"},"PDB":{"limit":"","prefix":"http://rdf.wwpdb.org/pdb/","sparql":""}}},"INSDC":{"key_regex":"^[A-Z]+[0-9]*","subject":"","dbs":{"UniProt":{"limit":"10","prefix":"http://purl.uniprot.org/embl-cds/","sparql":"select (?uniprot as ?merge) where { optional { ?uniprot <http://www.w3.org/2000/01/rdf-schema#seeAlso> [key]. }}"}}},"RefSeq":{"key_regex":"(NC|AC|NG|NT|NW|NZ|NM|NR|XM|XR|NP|AP|XP|YP|ZP)_[0-9]+","subject":"","dbs":{"UniProt":{"limit":"10","prefix":"http://purl.uniprot.org/refseq/","sparql":"select (?uniprot as ?merge) where { optional { ?uniprot <http://www.w3.org/2000/01/rdf-schema#seeAlso> [key]. }}"}}},"UniGene":{"key_regex":"([A-Z][a-z][a-z]?)[.]([1-9][0-9]*)","subject":"","dbs":{"UniProt":{"limit":"10","prefix":"http://purl.uniprot.org/unigene/","sparql":"select (?uniprot as ?merge) where { optional { ?uniprot <http://www.w3.org/2000/01/rdf-schema#seeAlso> [key]. }}"}}},"GeneID":{"key_regex":"[1-9][0-9]*","subject":"","dbs":{"UniProt":{"limit":"10","prefix":"http://purl.uniprot.org/geneid/","sparql":"select (?uniprot as ?merge) where { optional { ?uniprot <http://www.w3.org/2000/01/rdf-schema#seeAlso> [key]. } }"}}},"PubMed":{"key_regex":"^[1-9][0-9]{1,8}","subject":"","dbs":{"UniProt":{"limit":"10","prefix":"http://purl.uniprot.org/pubmed/","sparql":"select (?uniprot as ?merge) where { ?uniprot <http://purl.uniprot.org/core/citation> ?citation. ?citation <http://www.w3.org/2004/02/skos/core#exactMatch> [key].}"},"PDB":{"limit":"10","prefix":"http://rdf.wwpdb.org/pdb/","sparql":"select (?pdb as ?merge) from <http://pdbj.dbcls.jp/> where {?pdb <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_citationCategory> ?citationCategory. ?citationCategory <http://rdf.wwpdb.org/schema/pdbx-v40.owl#has_citation> ?citation. ?citation <http://rdf.wwpdb.org/schema/pdbx-v40.owl#link_to_pubmed> [key]. }"}}},"KEGG":{"key_regex":"[a-zA-Z_0-9]+:[a-zA-Z_0-9\\.-]*","subject":"","dbs":{"UniProt":{"limit":"10","prefix":"http://purl.uniprot.org/kegg/","sparql":"select (?uniprot as ?merge) where { optional { ?uniprot <http://www.w3.org/2000/01/rdf-schema#seeAlso> [key]. } }"}}},"UCSC":{"key_regex":"uc[0-9a-zA-Z]+\\.[0-9]+","subject":"","dbs":{"UniProt":{"limit":"10","prefix":"http://purl.uniprot.org/ucsc/","sparql":"select (?uniprot as ?merge) where { optional { ?uniprot <http://www.w3.org/2000/01/rdf-schema#seeAlso> [key]. } }"}}},"Ensembl":{"key_regex":"ENS[A-Z][0-9]+","subject":"","dbs":{"UniProt":{"limit":"10","prefix":"http://purl.uniprot.org/ensembl/","sparql":"select (?uniprot as ?merge) where { optional { ?uniprot <http://www.w3.org/2000/01/rdf-schema#seeAlso> [key]. }}"}}},"GlycomeDB":{"key_regex":"[0-9]+","subject":"GlycomeDB","dbs":{"GlycomeDB":{"limit":"","prefix":"http://rdf.glycome-db.org/glycan/"}}},"KEGG_GLYCAN":{"key_regex":"G[0-9]+","subject":"","dbs":{"GlycomeDB":{"limit":"10","prefix":"http://www.genome.jp/dbget-bin/www_bget?gl:","sparql":"select ?merge where { optional { ?merge <http://purl.jp/bio/12/glyco/glycan#has_resource_entry> [key]. } }"}}},"JCGGDB_ID":{"key_regex":"JCGG-","subject":"","dbs":{"GlycomeDB":{"limit":"10","prefix":"http://jcggdb.jp/idb/jcggdb/","sparql":"select ?merge where { optional { ?merge <http://purl.jp/bio/12/glyco/glycan#has_resource_entry> [key]. } }"}}}}